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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15276941_15277597_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15276941 - 15277597
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TCATATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTCTGTTTAATT
Flanking Amino Acid:
VEGALLNPAMIVDPFQVLVA
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
56.6
42.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82
0.72
0.9
76
37.5
Minor 5ss
23.3
-3.1
3.2
25.4
39.4
Minor BPS
67.9
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
TPRKB
Ensembl Gene ID:
ENSAPLG00000002009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002008
15276726 - 15278655
1930