About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152775420_152777977_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152775420 - 152777977
Intron Length:
2558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
CCCTCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATGGATT
Flanking Amino Acid:
DCYGAVVWPSALVLCYFLET
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
65.5
40.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.8
0.58
0.7
69
24.8
Minor 5ss
33.9
-1.8
3.4
48.9
47
Minor BPS
57.4
0.31
1.8
78.21
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005299
152760630 - 152779420
18791