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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152778096_152778995_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152778096 - 152778995
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTTCCTTTCACA
Flanking Amino Acid:
GLVSVVASLLGALVTATDLP
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.2
30.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
83.9
0.76
0.7
79
26.6
Minor 5ss
33.4
-1.9
2.8
34
41.5
Minor BPS
61.3
0.35
1.8
72.26
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005299
152760630 - 152779420
18791