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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152808158_152809996_R

Intron Information:

Intron Rank:
140604
Intron Class:
major
Intron Phase:
Intron Coordinates:
152808158 - 152809996
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCATTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
79.3
28.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
85.3
0.79
0.8
79.4
32.3
Minor 5ss
31
-2.2
3.1
39.7
45.8
Minor BPS
51.2
0.03
1.8
65.66
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034594
152807610 - 152810243
2634