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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152842215_152843308_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152842215 - 152843308
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TACCAATTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTATTTAATA
Flanking Amino Acid:
QLLFAIIFLAGYRVYRRYHV
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68
0.4
0.9
58.1
41.6
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
69.2
0.6
1.4
75.77
36

Associated Gene:

Gene:
SLC10A2
Ensembl Gene ID:
ENSAPLG00000005282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005461
152842081 - 152852936
10856