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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152843467_152844048_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152843467 - 152844048
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGATT
5'SS Class:
major
3'SS Sequence:
GTATTCCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATGACT
Flanking Amino Acid:
LARVAGLSWNRCRTVSLETG
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
77.5
36.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.1
0.54
0.8
71.2
35.6
Minor 5ss
43.6
-0.7
3.3
65.5
45.8
Minor BPS
67.6
0.64
1.6
84.88
35

Associated Gene:

Gene:
SLC10A2
Ensembl Gene ID:
ENSAPLG00000005282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005461
152842081 - 152852936
10856