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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152847615_152850707_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152847615 - 152850707
Intron Length:
3093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
ATCACTTTAACC
Flanking Amino Acid:
AYWVDGDMDLSISMTTCSTL
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
83.8
0.76
0.8
77.8
35.5
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
71.5
0.65
1.3
73.32
37.6

Associated Gene:

Gene:
SLC10A2
Ensembl Gene ID:
ENSAPLG00000005282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005461
152842081 - 152852936
10856