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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15291591_15291669_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15291591 - 15291669
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTTTATA
Flanking Amino Acid:
FDFDLSLSPASGNEDEVFVG
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
91.9
0.94
0.6
88.3
21.5
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
72.4
0.7
1.5
82.54
31.8

Associated Gene:

Gene:
GTSE1
Ensembl Gene ID:
ENSAPLG00000016363
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017077
15290746 - 15300811
10066