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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15292286_15293482_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15292286 - 15293482
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACA
5'SS Class:
strong_major
3'SS Sequence:
TTGAAATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTCTTGAAAT
Flanking Amino Acid:
GKSIMLTVEKPKQGKPSTSA
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.7
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.8
0.53
1
66.4
43.8
Minor 5ss
31.9
-2.1
3.1
40.7
45.3
Minor BPS
66.7
0.6
1.5
82.16
39

Associated Gene:

Gene:
GTSE1
Ensembl Gene ID:
ENSAPLG00000016363
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017077
15290746 - 15300811
10066