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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15294809_15295985_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15294809 - 15295985
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
CTTTCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTTCTGAATC
Flanking Amino Acid:
SLPISPIGKNGKSSTSSKAS
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.9
34.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.4
0.84
0.7
85.3
27.7
Minor 5ss
34.8
-1.7
3.3
47.1
43.6
Minor BPS
70.2
0.61
1.3
76.21
33.5

Associated Gene:

Gene:
GTSE1
Ensembl Gene ID:
ENSAPLG00000016363
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017077
15290746 - 15300811
10066