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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15296627_15297039_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15296627 - 15297039
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
GAGTTCTTAGTT
Flanking Amino Acid:
LGLTFCGTIGSAMAVSTPVK
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
71.6
40.2
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
82.3
0.73
0.8
80.3
31.6
Minor 5ss
33.1
-1.9
3.1
41.9
44.7
Minor BPS
58.5
0.34
1.6
69.45
41.8

Associated Gene:

Gene:
GTSE1
Ensembl Gene ID:
ENSAPLG00000016363
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017077
15290746 - 15300811
10066