Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15297286_15298327_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15297286 - 15298327

Intron Length:

1042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCTCCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAGAA

U12 Branch Point Sequence:

GAGTAAAGAACT

Flanking Amino Acid:

SFSTKKTHTNGSKQVKDAQI

Intron Amino Acid Position:

578

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

38.2

Major BPS

50.4

0.01

1.1

47.3

36.1

Major PPT

79.7

0.67

0.7

73.6

31.4

Minor 5ss

32.1

-2

3.1

34.7

41.5

Minor BPS

41.9

-0.5

58.99

42.7

Associated Gene:

Gene:

GTSE1

Ensembl Gene ID:

ENSAPLG00000016363

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017077

15290746 - 15300811

10066