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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15299754_15300727_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15299754 - 15300727
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTTATT
Flanking Amino Acid:
LKPTFSGQVKLIDLSSPLIT
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
61.4
0.44
1.9
82.19
38.8

Associated Gene:

Gene:
GTSE1
Ensembl Gene ID:
ENSAPLG00000016363
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017077
15290746 - 15300811
10066