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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15305345_15305817_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15305345 - 15305817
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAG
U12 Branch Point Sequence:
TTTTCCTTGCTA
Flanking Amino Acid:
YFLHYAMDNLGADAIATGHY
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
57.3
0.18
1.7
57.1
49.4
Major PPT
78.2
0.64
0.9
73.8
36.8
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
51.7
0.05
3.5
82.09
33.1

Associated Gene:

Gene:
TRMU
Ensembl Gene ID:
ENSAPLG00000016380
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017101
15302664 - 15313408
10745