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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15307980_15308905_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15307980 - 15308905
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTATGGATT
Flanking Amino Acid:
GLHHVLKKKESMGVCFIGER
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
64.5
37.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
88
0.85
0.7
85.4
28.4
Minor 5ss
31.8
-2.1
4.1
45.7
49.5
Minor BPS
49.4
0.03
1.7
74.14
36.3

Associated Gene:

Gene:
TRMU
Ensembl Gene ID:
ENSAPLG00000016380
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017101
15302664 - 15313408
10745