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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15310091_15311538_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15310091 - 15311538
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
AAAACATCACCA
Flanking Amino Acid:
KDVSTGDIFVAPSTNHPALY
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
80.4
0.68
0.9
73.8
40.8
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
42.5
-0.5
1.9
50.87
39.4

Associated Gene:

Gene:
TRMU
Ensembl Gene ID:
ENSAPLG00000016380
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017101
15302664 - 15313408
10745