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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15312020_15313163_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15312020 - 15313163
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCATCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTGTGTTCATCT
Flanking Amino Acid:
KPTRALTPGQFAVFYKGDEC
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
70.7
0.47
0.9
62.3
39.5
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
44.7
-0.3
2.1
63.25
47.3

Associated Gene:

Gene:
TRMU
Ensembl Gene ID:
ENSAPLG00000016380
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017101
15302664 - 15313408
10745