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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_153223662_153224096_F

Intron Information:

Intron Rank:
132372
Intron Class:
major
Intron Phase:
Intron Coordinates:
153223662 - 153224096
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTATG
5'SS Class:
major
3'SS Sequence:
TAAAATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTCTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
70.5
41.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
64.3
0.32
1
60.1
45
Minor 5ss
32.6
-2
3.1
38.2
41.2
Minor BPS
70
0.71
1.7
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021122
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028777
153223541 - 153247728
24188