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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15330065_15330883_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15330065 - 15330883
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCCATGTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTGCTCTATTT
Flanking Amino Acid:
IFHRNPSKSNEHDSDSDSEL
Intron Amino Acid Position:
2653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.9
32.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.1
0.48
0.9
65.3
36.1
Minor 5ss
39.9
-1.1
3.2
59.5
44.6
Minor BPS
48.1
-0
2
70.5
41.2

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941