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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15330988_15331537_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15330988 - 15331537
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCAA
5'SS Class:
major
3'SS Sequence:
TTTATTCTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTATTC
Flanking Amino Acid:
ESTVSLESTVRDDAAHKLSG
Intron Amino Acid Position:
2618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
65
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.8
0.56
1
79.6
32.6
Minor 5ss
32.6
-2
2.9
38.9
46.2
Minor BPS
53.6
0.09
1.6
60.6
40.1

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941