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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_153323027_153326894_F

Intron Information:

Intron Rank:
127330
Intron Class:
major
Intron Phase:
Intron Coordinates:
153323027 - 153326894
Intron Length:
3868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TATCTATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
82.4
0.73
1
79.9
37.7
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
65.7
0.49
1.6
75.37
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018662
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043943
153322680 - 153329937
7258