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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15332797_15334668_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15332797 - 15334668
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGAAATGATCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTCTCTGAAAT
Flanking Amino Acid:
YLFAIFSCLQGLFIFFFHCV
Intron Amino Acid Position:
2545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
79.2
0.72
1
75
40
Major PPT
58.1
0.18
1.1
47.4
48.6
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
65.5
0.56
1.5
83.8
36.1

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941