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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15334796_15336102_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15334796 - 15336102
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GTGTGCTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTGTGCTTTACA
Flanking Amino Acid:
RQRSFEKTGVISVLRTAFLL
Intron Amino Acid Position:
2502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.2
0.59
1
68.6
42.1
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
54.3
0.13
2.1
68.01
44.1

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941