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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15336183_15337508_R

Intron Information:

Intron Rank:
28
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15336183 - 15337508
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAGTTGTA
5'SS Class:
weak_major
3'SS Sequence:
ATTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTATTTCAATT
Flanking Amino Acid:
WSFAGPIVIVINTVIFILAM
Intron Amino Acid Position:
2476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.18
1.2
59.9
38.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.3
0.79
0.7
82.1
29.1
Minor 5ss
37.5
-1.4
3.6
54
44.7
Minor BPS
56.8
0.29
1.5
73.18
38

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941