About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15347812_15350312_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15347812 - 15350312
Intron Length:
2501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGAAAT
U12 Branch Point Sequence:
GCTCCCAGAAAT
Flanking Amino Acid:
PVCVFWNHSITIGGTGAWSS
Intron Amino Acid Position:
2272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
68.8
42.3
Major BPS
48.8
-0
1.2
54.6
37.8
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
46.3
-0.4
2.7
61
37
Minor BPS
47.6
-0.1
1.9
66.15
43.3

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941