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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15352304_15354533_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15352304 - 15354533
Intron Length:
2230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTATGTCAAAC
Flanking Amino Acid:
RPFVIVATNMIIAVDIFDKS
Intron Amino Acid Position:
2107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.4
36.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
38.5
-1.3
3.3
49.1
41.3
Minor BPS
46
-0.3
2.3
64.39
40.9

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941