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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15357524_15358311_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15357524 - 15358311
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
GTCTCTGGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTTCCTTCATT
Flanking Amino Acid:
TNTFVDLKIMNEKLHRNETK
Intron Amino Acid Position:
1976

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
62.4
44.7
Major BPS
75
0.62
1.1
77.2
36
Major PPT
71.3
0.48
1
68.7
42
Minor 5ss
44.3
-0.6
3.2
61.3
45.5
Minor BPS
79.8
1.02
1.6
95.75
31

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941