About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15361249_15362469_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15361249 - 15362469
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
AGTAAAATACCT
Flanking Amino Acid:
NKTNGECHCKANYYRPQSSD
Intron Amino Acid Position:
1849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
77.5
0.62
0.8
69.7
36.7
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
40.1
-0.6
2.1
59.82
42.4

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941