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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15362591_15364347_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15362591 - 15364347
Intron Length:
1757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGAGAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
QSYYGQYCESKIDLPCPRGW
Intron Amino Acid Position:
1808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
65
35
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
30.1
-2.3
3.6
37.4
41.8
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941