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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15364490_15365278_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15364490 - 15365278
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCAC
5'SS Class:
major
3'SS Sequence:
CTTGTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTGCTGTAATT
Flanking Amino Acid:
WDSYSCVCDPGYFGRDCVDV
Intron Amino Acid Position:
1761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
63.2
43.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.7
0.62
0.8
69.4
36.9
Minor 5ss
43.7
-0.7
2.9
59.1
45.6
Minor BPS
54.4
0.22
2.1
75.88
41.7

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941