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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15366422_15366858_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15366422 - 15366858
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAATG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TTTTTCCCAACA
Flanking Amino Acid:
AGSASKINIQILNNYVQFEV
Intron Amino Acid Position:
1603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
82.3
0.73
0.8
78.5
28.8
Minor 5ss
35
-1.7
3.4
48
47.7
Minor BPS
62.5
0.39
1.9
80.29
35.2

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941