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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15367026_15368600_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15367026 - 15368600
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACGC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
VRYGGKNCEQVMPSPQRFSG
Intron Amino Acid Position:
1547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
60.8
44.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
30.9
-2.2
3.3
42.1
44.7
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941