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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15370194_15371294_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15370194 - 15371294
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAC
U12 Branch Point Sequence:
TGTGCAGGAAAT
Flanking Amino Acid:
AAQGTQTGSKKSLDLTGPLL
Intron Amino Acid Position:
1450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
85.3
31.4
Major BPS
63.6
0.34
1.2
55.1
42.1
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
39.9
-1.1
3.4
58
40.7
Minor BPS
41.4
-0.5
2.4
64.38
45.1

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941