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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15392854_15396877_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15392854 - 15396877
Intron Length:
4024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
ATTACCTGATTA
Flanking Amino Acid:
RQRFHFTVSLMFATRERNAL
Intron Amino Acid Position:
1329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.8
38.2
Major BPS
70
0.5
1
59.3
39.1
Major PPT
74.4
0.55
0.9
64.7
41.4
Minor 5ss
37.9
-1.4
2.9
50.8
38.5
Minor BPS
53.9
0.12
1.7
67.75
38.5

Associated Gene:

Gene:
CELSR1
Ensembl Gene ID:
ENSAPLG00000016414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017137
15328394 - 15483334
154941