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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154281520_154305261_R

Intron Information:

Intron Rank:
133416
Intron Class:
major
Intron Phase:
Intron Coordinates:
154281520 - 154305261
Intron Length:
23742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATACT
5'SS Class:
major
3'SS Sequence:
TTATCTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
77.8
36.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.1
0.54
0.9
67.3
39.2
Minor 5ss
36.3
-1.5
3.1
51.8
44.8
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019037
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017934
154274586 - 154306009
31424