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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154514098_154516452_F

Intron Information:

Intron Rank:
147232
Intron Class:
major
Intron Phase:
Intron Coordinates:
154514098 - 154516452
Intron Length:
2355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TCTCCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
53.7
0.2
1.9
74.8
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029294
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048087
154513349 - 154516838
3490