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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154527321_154528702_R

Intron Information:

Intron Rank:
148015
Intron Class:
major
Intron Phase:
Intron Coordinates:
154527321 - 154528702
Intron Length:
1382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
AACATTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TCTTCAGGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
70.2
0.45
1
65.7
44.4
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
48.4
-0.1
2.3
69.44
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023229
154527314 - 154531489
4176