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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154533619_154554558_R

Intron Information:

Intron Rank:
134412
Intron Class:
major
Intron Phase:
Intron Coordinates:
154533619 - 154554558
Intron Length:
20940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTGGACTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.8
38
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79
0.65
0.9
73.7
35.9
Minor 5ss
36.6
-1.5
3.5
50.4
46.4
Minor BPS
45.1
-0.2
2
62.53
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038594
154533559 - 154571560
38002