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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154554659_154570576_R

Intron Information:

Intron Rank:
134413
Intron Class:
major
Intron Phase:
Intron Coordinates:
154554659 - 154570576
Intron Length:
15918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATGTATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
84.3
0.77
0.8
79.6
32.4
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
43.9
-0.3
2.1
63.75
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038594
154533559 - 154571560
38002