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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154554659_154584965_R

Intron Information:

Intron Rank:
134409
Intron Class:
major
Intron Phase:
Intron Coordinates:
154554659 - 154584965
Intron Length:
30307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATGTATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
84.3
0.77
0.8
79.6
32.4
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
43.9
-0.3
2.1
63.75
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017937
154553757 - 154585039
31283