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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154564094_154567006_R

Intron Information:

Intron Rank:
134414
Intron Class:
major
Intron Phase:
Intron Coordinates:
154564094 - 154567006
Intron Length:
2913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGAAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
70.7
34.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
35.2
-1.7
2.7
40.5
45.3
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039413
154563672 - 154568364
4693