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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154567330_154568219_R

Intron Information:

Intron Rank:
134415
Intron Class:
major
Intron Phase:
Intron Coordinates:
154567330 - 154568219
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGAAT
5'SS Class:
major
3'SS Sequence:
TTGCTTTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTTGCTTTGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
72.5
38.2
Major BPS
79
0.72
1
80.3
31.7
Major PPT
67.9
0.4
1
65.8
39.8
Minor 5ss
36.4
-1.5
3
48.6
47.3
Minor BPS
67
0.62
1.5
83.91
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039413
154563672 - 154568364
4693