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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154640977_154641491_F

Intron Information:

Intron Rank:
147282
Intron Class:
major
Intron Phase:
Intron Coordinates:
154640977 - 154641491
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCACTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.3
0.64
0.8
73.2
31.3
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
50.8
0.1
2
76.33
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029325
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017582
154640721 - 154644156
3436