Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154642873_154643156_F

Intron Information:

Intron Rank:

147284

Intron Class:

major

Intron Phase:

Intron Coordinates:

154642873 - 154643156

Intron Length:

284

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTGTATG

5'SS Class:

major

3'SS Sequence:

TCATCTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTCAT

U12 Branch Point Sequence:

AGAGCGAAAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.3

74.4

41.9

Major BPS

74.4

0.61

1.2

77.7

37.1

Major PPT

84.3

0.77

0.8

76.6

37.2

Minor 5ss

40.8

-1

2.6

51.1

45.4

Minor BPS

39.2

-0.7

2.4

56.85

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045964

154640721 - 154644225

3505

ENSAPLT00000024064

154642273 - 154644225

1953

ENSAPLT00000017582

154640721 - 154644156

3436