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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154674373_154695209_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
154674373 - 154695209
Intron Length:
20837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCACATTTACCT
Flanking Amino Acid:
DPIYWNSSNPKFLPGQGLVL
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.5
40.6
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
37.7
-1.4
3
50.6
39.9
Minor BPS
49.3
0.03
1.8
67
43.6

Associated Gene:

Gene:
EFNB2
Ensembl Gene ID:
ENSAPLG00000028346
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020820
154653900 - 154696039
42140