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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154707920_154712029_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
154707920 - 154712029
Intron Length:
4110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTAAAAA
Flanking Amino Acid:
KKAEFERQRKIRQQEIEEKL
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
77
31.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.3
0.61
0.9
69.7
41.2
Minor 5ss
32.3
-2
3.3
46.1
42.2
Minor BPS
51
0.03
1.9
67.93
38.2

Associated Gene:

Gene:
ARGLU1
Ensembl Gene ID:
ENSAPLG00000020382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023327
154703842 - 154712385
8544