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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154768800_154769983_F

Intron Information:

Intron Rank:
131952
Intron Class:
major
Intron Phase:
Intron Coordinates:
154768800 - 154769983
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CATGTCTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
AGTTCCACCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
63.4
0.3
1.1
58.8
41.5
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
46
-0.2
2.2
68.67
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020845
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047411
154768460 - 154770680
2221