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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154768800_154771930_F

Intron Information:

Intron Rank:
131949
Intron Class:
major
Intron Phase:
Intron Coordinates:
154768800 - 154771930
Intron Length:
3131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCCTGTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
83.9
0.76
0.7
80.1
25.3
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
62.6
0.37
1.8
69.26
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020845
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037268
154768460 - 154773112
4653