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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154772146_154773168_F

Intron Information:

Intron Rank:
131950
Intron Class:
major
Intron Phase:
Intron Coordinates:
154772146 - 154773168
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
75.6
29.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.5
0.55
1.1
74.8
38.8
Minor 5ss
34.3
-1.8
3.2
44.1
44.7
Minor BPS
68.2
0.43
1.4
70.46
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020845
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045547
154772024 - 154774926
2903