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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154790126_154800159_F

Intron Information:

Intron Rank:
125600
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
154790126 - 154800159
Intron Length:
10034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
ATAAAATGAGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTCTTTAACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
46.1
-0.2
1.2
39.8
42
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
47.8
-0.1
1.8
63.33
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017655
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043532
154789960 - 154801200
11241